NEWS.md
2024-03-13
autographr() examples that were taking too long to runautographr(), autographs(), and autographd() functionsautographr(), autographs(), and autographd() functionsnode_is_infected(), node_is_recovery(), node_is_latent() work for network lists2024-03-12
play_diffusions() to revert future plan on exitgenerate_random() works for two-mode networks with specified number of tiesautographr() more flexible and efficient in setting variables to aesthetics2023-12-24
run_tute()
2023-12-24
pkg_data() to report an overview of data contained within the package(s)play_diffusion() and play_diffusions() from migraphplay_learning() and play_segregation() from migraphcreate_tree() where it was not returning a two-mode network correctlyas_diffusion() to coerce a table of diffusion events into diff_model classas_*() functions are now considered modificationsmutate_nodes()
filter_nodes()
rename_nodes()
bind_ties()
delete_ties()
to_tree() to find one or more spanning trees amongst a network’s tiesfrom_ties() to collect multiple networks into a multiplex networkis.igraph() to is_igraph() for igraph v2.0.0is_list() for identifying a list of networksnode_is_core(), node_is_cutpoint(), node_is_fold(), node_is_isolate(), node_is_mentor() from migraph
node_is_exposed(), node_is_infected(), node_is_latent(), node_is_recovered() from migraph
node_is_max(), node_is_min(), node_is_random() from migraph
tie_is_bridge(), tie_is_loop(), tie_is_multiple(), tie_is_reciprocated() from migraph
tie_is_feedback()
tie_is_max(), tie_is_min() from migraph
tie_is_random()
scale_edge_color_centres(), scale_edge_color_ethz(), scale_edge_color_iheid(), scale_edge_color_rug(), scale_edge_color_sdgs()autographr() now provides legends by default where multiple colours are used (closes #52)autographs() now labels legends correctly for binary variables (closes #38)autographs() now graphs just the first and last networks in a list (closes #45)autographs() now includes an option whether the layout should be based on the first, last, or both of two networks (closes #48)ison_konigsberg to ison_koenigsberg and named the bridgesison_algebra now in long multiplex formatison_karateka now weighted, anonymous members are named by number, and “obc” variable renamed “allegiance”ison_lawfirm enlarged from 36 to 71 nodes and now consists of three multiplex, directed networksison_southern_women names are now title caseison_hightech, a multiplex, directed network from Krackhardt 1987ison_monastery datasets, three of which are signed and weighted, and the other is longitudinal, from Sampson 1969 (closes #49)ison_potter datasets in a list of networks, from Bossaert and Meidert 2013 (closes #47)ison_usstates data on the contiguity of US states, from Meghanathan 20172023-12-17
to_waves.diff_model() now adds three logical vectors as variables, “Infected”, “Exposed”, and “Recovered”node_is_latent(), node_is_infected(), and node_is_recovered()
autographr() now shapes seed, adopter, and non-adopter nodes using a parallel to migraph’s node_adoption_time() forautographs() now colors susceptible, exposed, infected, and recovered nodes correctlyautographd() now colors susceptible, exposed, infected, and recovered nodes correctly2023-12-15
as_tidygraph() method for diff_model objectsas_siena() method for tidygraph objectsto_waves() now works on diff_model objects, add attributes and namesis_multiplex() now recognises a tie/edge ‘type’ attribute as evidence of multiplexityigraph::is_bipartite() is superseded by is_twomode()
tidygraph::activate() is superseded by mutate_ties() and similar functionsigraph::as_incidence_matrix() and igraph::graph_from_incidence_matrix() with igraph::as_biadjacency_matrix() and igraph::graph_from_biadjacency_matrix()
autographr() now plots diff_model objects, showing the diffusion as a heatmap on the verticesautographs() and autographd() now utilise network information in diff_model objects to provide better layouts (closed #17)node_size in autographd()
many_palettes replaces iheid_palette
theme_ethz(), scale_color_ethz()/scale_colour_ethz(), and scale_fill_ethz() for ETH Zürichtheme_uzh(), scale_color_uzh()/scale_colour_uzh(), and scale_fill_uzh() for Uni Zürichtheme_rug(), scale_color_rug()/scale_colour_rug(), and scale_fill_rug() for Uni Gröningen2023-12-06
run_tute()
read_graphml() and write_graphml() for importing and exporting graphml objects, mostly wrappers for igraph functions.autographd() and autographs() can now be used for plotting diffusion models.to_waves() and autographd() to account for ‘exposed’ nodes in diffusion models.hierarchical layout so that node name can be specified for centering the layouttheme_heid() layout2023-11-15
run_tute()function to “fuzzy” match tutorial names+.ggplot() method for visualising multiple plots in the same panetheme_iheid for plotsscale_ family of functions for changing colour scales in plotsautographr():autographd() function2023-11-01
as_igraph() in accordance with upcoming updates to igraph package (closing #27)autographr() related to edge_size and edge_color
autographr()
autographr()
autographr()
2023-10-25
generate examples leverage autographr() againto_redirected.tbl_graph()
print.tbl_graph() no longer mentions the object classlayout_tbl_graph_concentric() now works with two-mode networks, multiple levels for one-mode networks, and accepts new vectorslayout_tbl_graph_multilevel() for laying out multilevel networkslayout_tbl_graph_triad() and layout_tbl_graph_quad() configurational layouts2023-10-19
run_tute() helper for quicker access to manynet and migraph tutorialsextract_tute() for extracting the main code examples from manynet and migraph tutorialspurl = FALSE to tutorial chunks that are not needed for extraction (thanks @JaelTan)run_tute() and extract_tute()
2023-10-11
to_galois() for transforming networks into partially ordered Galois latticesautographr()
autographr(), closes #11autographr()
autographr() now automatically bends arcs for reciprocated ties when directed network is not too large/denseautographr() now accepts unquoted variables as argumentsautographr() now uses graphlayouts::layout_igraph_multilevel where appropriate2023-08-11
thisRequiresBio() helper function to download Bioconductor packagesison_konigsberg for illustrating Seven Bridges of Konigsbergison_brandes2 and added potential modal type as extra variable to ison_brandes
ison_bb, ison_bm, ison_mb, and ison_mm into a list of networks called ison_laterals
create_explicit() for creating networks based on explicit nodes and tiesdelete_nodes() for deleting specific nodesto_eulerian() function that returns a Eulerian path network, if available, from a given networkis_ functions from migraphis_connected() to test if network is strongly connectedis_perfect_matching() to test if there is a matching for every node in the networkis_eulerian() to test whether there is a Eulerian path for a networkis_acyclic to test whether network is a directed acyclic graphis_aperiodic to test whether network is aperiodiclayout_tbl_graph_alluvial() that places successive layers horizontallylayout_tbl_graph_concentric()that places a “hierarchy” layout around a circlelayout_tbl_graph_hierarchy() that layers the nodes along the top and bottom sequenced to minimise overlaplayout_tbl_graph_ladder()that aligns nodes across successive layers horizontallylayout_tbl_graph_railway that aligns nodes across successive layers verticallytheme_iheid() function that themes graphs with colors based on the Geneva Graduate Institute2023-06-07
.data
print.tbl_graph method that offers easy to interpret informationread_*() functions, e.g. read_edgelist()
write_*() functions, e.g. write_edgelist()write_matrix() for exporting to matricescreate_*() functions, e.g. create_lattice()create_*() functions return tbl_graph class objectsgenerate_*() functions, e.g. generate_smallworld()
ison_* network data, e.g. ison_southern_women
as_*() functions, e.g. as_igraph()as_edgelist.network()
as_network.data.frame()
as_network.tbl_graph()
join_*() functions, e.g. join_ties()
add_*() functions, e.g. add_node_attribute()create_*() functions return tbl_graph class objectsmutate_*() functions, e.g. mutate_ties()mutate_ties(), it is no longer necessary to activate(edges)
rename_*() functions, e.g. rename_ties()
is_*() functions, e.g. is_dynamic()is_labelled() to work correctly with multiple network formatsto_*() functions, e.g. to_mode1()to_giant.network()
to_directed() now a methodto_subgraphs() now returns a list of tbl_graphsto_reciprocated() now works on edgelists, matrices, tbl_graphs, and networksto_acylic() now works on matrices, tbl_graphs, and networksfrom_*() functions, e.g. from_egos()from_subgraphs()
network_nodes()network_dims() is now a methodautographr(), autographs(), and autographd()